Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6417512_6417629_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6417512 - 6417629

Intron Length:

118

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTAAGTATC

5'SS Class:

major

3'SS Sequence:

CCAAGGGGCCAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTTCAG

U12 Branch Point Sequence:

TGGTGGGGGATT

Flanking Amino Acid:

IIHNPGFEELEASEMDRKAA

Intron Amino Acid Position:

163

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

35.3

Major BPS

67.2

0.43

1.5

77.4

37.3

Major PPT

43.6

-0.3

1.1

28.3

35.6

Minor 5ss

41.6

-0.9

2.8

51.4

39.2

Minor BPS

32.9

-1.2

2.6

51.54

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005376

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005587

6386904 - 6421718

34815