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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6417672_6418298_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6417672 - 6418298
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGAAA
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCCTTACAG
Flanking Amino Acid:
EEDFVYQMKDSSELIIHNPG
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.4
36.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
93.4
0.98
0.6
88.4
21.4
Minor 5ss
37.7
-1.4
3.1
48.2
47.6
Minor BPS
68.9
0.46
1.8
76.73
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005376
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005587
6386904 - 6421718
34815