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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6418379_6420071_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6418379 - 6420071
Intron Length:
1693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
GATCTACATTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GGCAATTTAATT
Flanking Amino Acid:
LVDRNHSITSLDLRYQPPDG
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
68.3
42.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
48.4
-0
1.7
56
43.6
Minor 5ss
38.8
-1.3
3
52.6
43.7
Minor BPS
51.4
0.12
1.5
63.11
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005376
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005587
6386904 - 6421718
34815