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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6420172_6421267_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6420172 - 6421267
Intron Length:
1096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
ATTTTGTTACAG
Flanking Amino Acid:
VYNCSKVFSNRLLGTLVLSL
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.3
40.8
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
79.2
0.66
1
72.4
42.2
Minor 5ss
35.5
-1.7
3.2
50.7
45.7
Minor BPS
45.6
-0.4
2.3
58.22
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005376
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005587
6386904 - 6421718
34815