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Intron Name: Anas_platyrhynchos_platyrhynchos_21_6431901_6431978_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6431901 - 6431978

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCCT

5'SS Class:

strong_major

3'SS Sequence:

TCCCTATTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

CATTCTGTCACT

Flanking Amino Acid:

FGAQVPPSWQVSHEFALNFN

Intron Amino Acid Position:

356

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.92

0.9

76.1

39.5

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

76.9

0.61

0.8

69.3

35.9

Minor 5ss

33.4

-1.9

3.4

48.4

47.3

Minor BPS

48.5

-0

2.4

72.26

Associated Gene:

Gene:

CPNE1

Ensembl Gene ID:

ENSAPLG00000004619

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030691

6427131 - 6440877

13747

ENSAPLT00000004840

6427380 - 6459701

32322