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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6432836_6433269_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6432836 - 6433269
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTGAACTGATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATCTTCTGAACT
Flanking Amino Acid:
IMGGCQINFTVGIDFTGSNG
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.2
37.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
53.5
0.08
1
51.8
42.3
Minor 5ss
37
-1.5
3
50
46.3
Minor BPS
71.1
0.74
1.4
82.91
38.1

Associated Gene:

Gene:
CPNE1
Ensembl Gene ID:
ENSAPLG00000004619
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030691
6427131 - 6440877
13747
ENSAPLT00000004840
6427380 - 6459701
32322