Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6440878_6459558_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

6440878 - 6459558

Intron Length:

18681

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGGCTT

5'SS Class:

major

3'SS Sequence:

CTTCTGCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTGAC

U12 Branch Point Sequence:

CGGGCCTGACCC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

69.5

42.7

Major BPS

51.1

0.03

1.2

39.9

Major PPT

75.3

0.57

0.8

69.2

31.4

Minor 5ss

30.8

-2.2

3.5

39.2

46.1

Minor BPS

45.9

-0.3

1.9

51.46

45.5

Associated Gene:

Gene:

CPNE1

Ensembl Gene ID:

ENSAPLG00000004619

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004840

6427380 - 6459701

32322