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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6473964_6474588_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6473964 - 6474588
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
ATTTAGATAACA
Flanking Amino Acid:
IQHVKRLREMSPLWEMVQDG
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
74
38.4
Major BPS
79.2
0.72
1
75
40
Major PPT
83.8
0.76
0.7
79
26.7
Minor 5ss
34.1
-1.8
3.2
46.7
48.6
Minor BPS
48.7
-0.1
2.4
72.06
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003958
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004080
6471362 - 6485486
14125