About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6474679_6474799_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6474679 - 6474799
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CAGTTCTTAATG
Flanking Amino Acid:
TDEDLAHSSIRFGIGRFTTE
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
70.2
35.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.5
0.75
0.7
81.7
30.3
Minor 5ss
32.7
-2
3.1
40.4
45.8
Minor BPS
64.5
0.32
1.4
59.55
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003958
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004080
6471362 - 6485486
14125