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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6474884_6476245_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6474884 - 6476245
Intron Length:
1362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAC
U12 Branch Point Sequence:
TGAAATTGACCT
Flanking Amino Acid:
ALKDVALSSGSACTSASLEP
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.4
39.5
Major BPS
69.9
0.49
0.9
61.1
36.4
Major PPT
76.9
0.61
0.7
76.4
25.7
Minor 5ss
30.7
-2.2
3.4
40.4
45.8
Minor BPS
44.1
-0.3
1.8
60.55
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003958
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004080
6471362 - 6485486
14125