Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6481505_6482546_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6481505 - 6482546

Intron Length:

1042

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTTAT

5'SS Class:

strong_major

3'SS Sequence:

AATATTTCATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTCAT

U12 Branch Point Sequence:

TTAGTCATAACT

Flanking Amino Acid:

VQKNGLIDLKELEAAFQPDT

Intron Amino Acid Position:

176

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

30.2

Major BPS

0.67

1.1

77.7

37.1

Major PPT

0.45

67.9

42.5

Minor 5ss

40.5

-1.1

3.2

57.3

47.4

Minor BPS

0.49

1.7

81.43

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003958

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004080

6471362 - 6485486

14125