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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6484362_6484979_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6484362 - 6484979
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCTTTTTCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCTTTTTCAACA
Flanking Amino Acid:
SEAAVEKARRQVADLIGADS
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
63.1
43.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.9
0.76
0.8
81.1
29.5
Minor 5ss
26.2
-2.7
2.9
22.9
37.3
Minor BPS
66.6
0.52
1.5
74.67
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003958
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004080
6471362 - 6485486
14125