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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6485097_6485315_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6485097 - 6485315
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTGCT
5'SS Class:
major
3'SS Sequence:
TTGTGTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
TGTTGCTGAGCA
Flanking Amino Acid:
YMDVQATTPLDPRVLDSMLP
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
67.8
37.3
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
80
0.67
0.9
74
36.8
Minor 5ss
29
-2.4
3.3
38.1
42
Minor BPS
49.9
-0
2.1
69.35
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003958
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004080
6471362 - 6485486
14125