Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6488180_6489935_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6488180 - 6489935

Intron Length:

1756

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCCAC

5'SS Class:

major

3'SS Sequence:

TTCTTTATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTTTCTTTATTT

Flanking Amino Acid:

GALFGTFSCLRIGMRGRELM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.8

0.7

41.2

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

90.2

0.9

0.7

89.1

26.1

Minor 5ss

44.3

-0.6

2.8

58.6

46.2

Minor BPS

76.2

0.9

1.4

91.47

32.2

Associated Gene:

Gene:

ROMO1

Ensembl Gene ID:

ENSAPLG00000003945

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004032

6488049 - 6490044

1996