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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6493288_6493385_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6493288 - 6493385
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTGATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
VNALHGRWFAGKMITAAYVP
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
66.7
0.38
1
67.2
38.5
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
RBM39
Ensembl Gene ID:
ENSAPLG00000003477
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034156
6493187 - 6519493
26307
ENSAPLT00000030620
6493187 - 6519493
26307
ENSAPLT00000003602
6493187 - 6519493
26307