Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6495769_6495938_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6495769 - 6495938

Intron Length:

170

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

CTACCCCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TCCTCTTCTACC

Flanking Amino Acid:

FQLSNMFNPQTEEEAGWDTE

Intron Amino Acid Position:

428

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

1.2

81.4

32.7

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

73.3

0.52

0.8

66.1

29.7

Minor 5ss

35.7

-1.6

3.3

48.3

41.3

Minor BPS

50.1

-0

1.9

62.37

43.5

Associated Gene:

Gene:

RBM39

Ensembl Gene ID:

ENSAPLG00000003477

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003602

6493187 - 6519493

26307

ENSAPLT00000034156

6493187 - 6519493

26307

ENSAPLT00000030620

6493187 - 6519493

26307