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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6497153_6503215_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6497153 - 6503215
Intron Length:
6063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
TGCTAATTAACT
Flanking Amino Acid:
SGSLAFGAVADLQTRLSQQN
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
90.6
0.91
0.7
89.2
27.2
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
62
0.46
1.8
79.32
42.1

Associated Gene:

Gene:
RBM39
Ensembl Gene ID:
ENSAPLG00000003477
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030620
6493187 - 6519493
26307
ENSAPLT00000003602
6493187 - 6519493
26307
ENSAPLT00000034156
6493187 - 6519493
26307