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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6506630_6507121_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6506630 - 6507121
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTACATAATT
Flanking Amino Acid:
GVPIIVQASQAEKNRAAAMA
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
89
0.88
0.6
85.2
22.4
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
69.3
0.68
1.8
90.28
33.2

Associated Gene:

Gene:
RBM39
Ensembl Gene ID:
ENSAPLG00000003477
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003602
6493187 - 6519493
26307
ENSAPLT00000034156
6493187 - 6519493
26307
ENSAPLT00000030620
6493187 - 6519493
26307