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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6507275_6507814_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6507275 - 6507814
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAACAT
U12 Branch Point Sequence:
CTATCTATAACA
Flanking Amino Acid:
LEEFFSTVGKVRDVRMISDR
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
62.2
0.3
1.1
69.4
35.8
Major PPT
76.9
0.61
0.8
74
36.1
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
64.5
0.45
1.6
73.04
38.8

Associated Gene:

Gene:
RBM39
Ensembl Gene ID:
ENSAPLG00000003477
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034156
6493187 - 6519493
26307
ENSAPLT00000030620
6493187 - 6519493
26307
ENSAPLT00000003602
6493187 - 6519493
26307