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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6513345_6517548_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6513345 - 6517548
Intron Length:
4204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GCATTTGTAACA
Flanking Amino Acid:
SANGHEERSKKRKKSKSRSR
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
82.3
0.73
0.7
80.2
25.1
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
49.4
-0
2
59.83
40.5

Associated Gene:

Gene:
RBM39
Ensembl Gene ID:
ENSAPLG00000003477
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034156
6493187 - 6519493
26307
ENSAPLT00000030620
6493187 - 6519493
26307
ENSAPLT00000003602
6493187 - 6519493
26307