Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6553498_6556571_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6553498 - 6556571

Intron Length:

3074

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GTG|GCTTTTTGT

5'SS Class:

weak_major

3'SS Sequence:

TGCACTAACCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAC

U12 Branch Point Sequence:

CGTGCACTAACC

Flanking Amino Acid:

KQDAQCCCHVLLFPHSSDWV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

50.3

0.01

1.4

41.9

Major BPS

64.5

0.36

65.2

28.2

Major PPT

60.5

0.24

51.3

41.7

Minor 5ss

34.3

-1.8

3.8

47.7

42.9

Minor BPS

47.7

-0.1

2.1

61.11

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003465

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003535

6553453 - 6585307

31855

ENSAPLT00000042950

6553453 - 6585307

31855