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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6563896_6563949_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6563896 - 6563949
Intron Length:
54

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAACAGT
5'SS Class:
major
3'SS Sequence:
CCTTCAGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTCCCTTCAGCT
Flanking Amino Acid:
TGTKAAMLVKSAPEANSQKS
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1
64.9
41
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
72.8
0.51
0.9
65.7
34.9
Minor 5ss
36.7
-1.5
3.1
48.3
42.1
Minor BPS
52.8
0.17
1.8
73.65
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003465
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003535
6553453 - 6585307
31855