Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6565147_6569704_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6565147 - 6569704

Intron Length:

4558

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCTCCC

5'SS Class:

major

3'SS Sequence:

GGTGGACCCCAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTGCAG

U12 Branch Point Sequence:

TCCTTTGCAGCC

Flanking Amino Acid:

SSGAMRRSSQQENSGQPGGC

Intron Amino Acid Position:

545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.2

60.8

44.2

Major BPS

51.1

0.03

1.8

71.4

45.1

Major PPT

-0.1

1.1

38.6

39.5

Minor 5ss

-1.1

54.6

42.5

Minor BPS

39.8

-0.7

2.2

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003465

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025826

6556383 - 6585307

28925