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Intron Name: Anas_platyrhynchos_platyrhynchos_21_6578808_6580090_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6578808 - 6580090

Intron Length:

1283

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTGTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAG

U12 Branch Point Sequence:

CTGCACTGAGCT

Flanking Amino Acid:

QKVAVTGGKKGLRKPTVEEI

Intron Amino Acid Position:

788

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.7

0.96

0.8

78.3

32.5

Major BPS

58.6

0.22

1.5

38.9

Major PPT

73.3

0.52

0.8

64.5

36.5

Minor 5ss

35.1

-1.7

2.8

43.9

Minor BPS

46.3

-0.2

1.9

63.63

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003465

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042950

6553453 - 6585307

31855

ENSAPLT00000035580

6556102 - 6581172

25071

ENSAPLT00000025826

6556383 - 6585307

28925

ENSAPLT00000003535

6553453 - 6585307

31855