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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6580291_6580396_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6580291 - 6580396
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGAGAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATCAA
U12 Branch Point Sequence:
CTTCCCTGAGAA
Flanking Amino Acid:
LGGEQTEGIFSTLSQITRKN
Intron Amino Acid Position:
854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.3
32.5
Major BPS
62.4
0.31
1
64
32.1
Major PPT
54.9
0.11
1
50.6
36.8
Minor 5ss
43
-0.8
3
58.3
46.6
Minor BPS
49
-0
1.8
63.51
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003465
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042950
6553453 - 6585307
31855
ENSAPLT00000025826
6556383 - 6585307
28925
ENSAPLT00000003535
6553453 - 6585307
31855