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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6580463_6584482_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6580463 - 6584482
Intron Length:
4020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATGCATT
5'SS Class:
weak_major
3'SS Sequence:
GGGAAGTAACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TGTATCTGAACG
Flanking Amino Acid:
PLQVQESSVHLAVLMPSAFC
Intron Amino Acid Position:
876

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.1
69.2
41
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
47.6
-0.1
1.1
33
44.8
Minor 5ss
63.9
0.47
2.4
80.7
33.1
Minor BPS
60.9
0.2
1.6
65.87
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003465
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042950
6553453 - 6585307
31855
ENSAPLT00000025826
6556383 - 6585307
28925
ENSAPLT00000003535
6553453 - 6585307
31855