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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6602058_6608535_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6602058 - 6608535
Intron Length:
6478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTGCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGATATTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.2
0.75
0.9
80.8
36.5
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
67
0.61
1.4
78.65
37.4

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027561
6599130 - 6666121
66992
ENSAPLT00000003177
6599130 - 6666121
66992