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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6603797_6608535_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6603797 - 6608535
Intron Length:
4739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGCTT
5'SS Class:
major
3'SS Sequence:
TTGCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGATATTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.5
42.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.2
0.75
0.9
80.8
36.5
Minor 5ss
30.8
-2.2
3.5
39.2
46.1
Minor BPS
67
0.61
1.4
78.65
37.4

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043814
6603669 - 6666121
62453
ENSAPLT00000017982
6603669 - 6666121
62453