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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6608651_6614928_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6608651 - 6614928
Intron Length:
6278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATATTTT
5'SS Class:
weak_major
3'SS Sequence:
CTGTTCTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCATTCTTAACT
Flanking Amino Acid:
QLEARDRLKNWYPAHIEEID
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
75.6
34.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76.5
0.6
1
69.1
41.8
Minor 5ss
56.1
0.21
2.5
72.3
40
Minor BPS
82.1
1.09
1.1
88.33
36.7

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025208
6608568 - 6666121
57554
ENSAPLT00000017982
6603669 - 6666121
62453
ENSAPLT00000003177
6599130 - 6666121
66992
ENSAPLT00000043814
6603669 - 6666121
62453
ENSAPLT00000027561
6599130 - 6666121
66992