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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_661057_661477_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
661057 - 661477
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGTATG
5'SS Class:
major
3'SS Sequence:
AATGTCATAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTCTTTTAATG
Flanking Amino Acid:
LQEIFDSIQPKMFGMVLEKI
Intron Amino Acid Position:
816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
76.7
38.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
59.2
0.21
1
53
40.7
Minor 5ss
37.4
-1.4
2.7
44.8
36.5
Minor BPS
63.4
0.28
1.3
63.63
39.2

Associated Gene:

Gene:
CSE1L
Ensembl Gene ID:
ENSAPLG00000010368
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010876
659079 - 678463
19385