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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6615101_6615279_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6615101 - 6615279
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TACTGTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACACTTTTAAAT
Flanking Amino Acid:
EGLHEEEGCAGFHINDQVLA
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.4
0.57
0.9
69.8
36.3
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
55.4
0.25
1.4
65.46
38.9

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025208
6608568 - 6666121
57554
ENSAPLT00000017982
6603669 - 6666121
62453
ENSAPLT00000003177
6599130 - 6666121
66992
ENSAPLT00000043814
6603669 - 6666121
62453
ENSAPLT00000027561
6599130 - 6666121
66992