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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6615365_6615877_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6615365 - 6615877
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCAAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGATCTTTAATA
Flanking Amino Acid:
PAKVTSVNKDGTYTVKFYDG
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.9
36.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.8
0.56
0.9
71.7
38
Minor 5ss
35
-1.7
3.2
47
42.5
Minor BPS
76.3
0.82
1.1
76.92
33.9

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027561
6599130 - 6666121
66992
ENSAPLT00000025208
6608568 - 6666121
57554
ENSAPLT00000017982
6603669 - 6666121
62453
ENSAPLT00000003177
6599130 - 6666121
66992
ENSAPLT00000043814
6603669 - 6666121
62453