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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6615958_6619792_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6615958 - 6619792
Intron Length:
3835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTATTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATATTTCACT
Flanking Amino Acid:
IHVKAFSKDQNIVGNAKPKE
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.2
0.7
0.8
76.7
30.6
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
60
0.39
1.9
81.67
39.8

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025208
6608568 - 6666121
57554
ENSAPLT00000017982
6603669 - 6666121
62453
ENSAPLT00000003177
6599130 - 6666121
66992
ENSAPLT00000043814
6603669 - 6666121
62453
ENSAPLT00000027561
6599130 - 6666121
66992