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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6620679_6622094_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6620679 - 6622094
Intron Length:
1416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
TTCTCTGTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TATGCCTTCATA
Flanking Amino Acid:
SKRPRVERNLSQEKLKNSSD
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
74.3
36.2
Major BPS
75
0.62
1.1
77.2
36
Major PPT
79.9
0.67
0.8
73
37.4
Minor 5ss
35.2
-1.7
3.5
49.9
46.4
Minor BPS
60.8
0.33
1.9
72.14
40.4

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017982
6603669 - 6666121
62453
ENSAPLT00000003177
6599130 - 6666121
66992
ENSAPLT00000043814
6603669 - 6666121
62453
ENSAPLT00000027561
6599130 - 6666121
66992