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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6620679_6623045_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6620679 - 6623045
Intron Length:
2367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
CCCTCCCTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTTACTCAGTT
Flanking Amino Acid:
SKRPRVERNLFQLDVPVESD
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
74.3
36.2
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
74.5
0.55
0.7
68.2
25.6
Minor 5ss
35.2
-1.7
3.5
49.9
46.4
Minor BPS
56.6
0.29
2
81.59
40

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025208
6608568 - 6666121
57554