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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_662689_662896_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
662689 - 662896
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TTTAACTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AATCTTTTAACT
Flanking Amino Acid:
LLNSIIEHMPPESVDQYRKQ
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.3
62.7
43.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.2
0.54
0.9
66.3
40.3
Minor 5ss
32.5
-2
2.6
39.5
38.8
Minor BPS
71.8
0.76
1.1
80.75
34.3

Associated Gene:

Gene:
CSE1L
Ensembl Gene ID:
ENSAPLG00000010368
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010876
659079 - 678463
19385