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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_663923_664439_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
663923 - 664439
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTTCTGAATT
Flanking Amino Acid:
FTEILQNDVQEFIPYVFQVM
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.1
28.4
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
88.9
0.88
0.7
81.3
35.7
Minor 5ss
39.8
-1.1
2.8
50.7
45.7
Minor BPS
78.4
0.97
1.2
92.49
29.5

Associated Gene:

Gene:
CSE1L
Ensembl Gene ID:
ENSAPLG00000010368
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010876
659079 - 678463
19385