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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6642125_6645054_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6642125 - 6645054
Intron Length:
2930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGCTTC
5'SS Class:
major
3'SS Sequence:
TGTCTAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
ATATCTTTAAAA
Flanking Amino Acid:
KPPEKKRVENAVKEYEKNKE
Intron Amino Acid Position:
576

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
66
40.7
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
78.5
0.64
0.9
74.8
38.9
Minor 5ss
47.5
-0.2
3.1
64.3
42.6
Minor BPS
72.4
0.7
1.3
76.17
34.2

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025208
6608568 - 6666121
57554
ENSAPLT00000017982
6603669 - 6666121
62453
ENSAPLT00000043814
6603669 - 6666121
62453
ENSAPLT00000027561
6599130 - 6666121
66992