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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6645154_6647909_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6645154 - 6647909
Intron Length:
2756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGCTT
5'SS Class:
major
3'SS Sequence:
TACAATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TACTTCTTACAA
Flanking Amino Acid:
KKKKKKRAKPDYSGSEENTD
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
68.5
42
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
75.8
0.58
0.9
68.4
41.5
Minor 5ss
36.2
-1.6
3.6
52.8
45.5
Minor BPS
55.5
0.17
1.7
65.11
41.3

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027561
6599130 - 6666121
66992
ENSAPLT00000025208
6608568 - 6666121
57554
ENSAPLT00000017982
6603669 - 6666121
62453
ENSAPLT00000003177
6599130 - 6666121
66992
ENSAPLT00000043814
6603669 - 6666121
62453