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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_664591_665425_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
664591 - 665425
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGC
5'SS Class:
strong_major
3'SS Sequence:
AACTTGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTCATAACT
Flanking Amino Acid:
LTQKLLAVSKNPSKPHFNHY
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
70.2
40.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
73
0.52
0.9
69.9
40.6
Minor 5ss
32
-2.1
3.2
43
44.2
Minor BPS
72.7
0.79
1.6
88.54
36.3

Associated Gene:

Gene:
CSE1L
Ensembl Gene ID:
ENSAPLG00000010368
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010876
659079 - 678463
19385