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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6648072_6650452_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6648072 - 6650452
Intron Length:
2381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAAGGA
5'SS Class:
major
3'SS Sequence:
GCTTTTTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GCTGTTTTATCT
Flanking Amino Acid:
GQHRGKSKTNEEDTMSESSM
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
61.2
37.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.4
0.71
0.9
76.3
36.9
Minor 5ss
29.3
-2.4
3.4
35.5
43.1
Minor BPS
51.8
0.14
1.7
67.28
44.2

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017982
6603669 - 6666121
62453
ENSAPLT00000003177
6599130 - 6666121
66992
ENSAPLT00000043814
6603669 - 6666121
62453
ENSAPLT00000027561
6599130 - 6666121
66992
ENSAPLT00000025208
6608568 - 6666121
57554