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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6650623_6655381_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6650623 - 6655381
Intron Length:
4759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGATG
5'SS Class:
strong_major
3'SS Sequence:
TGACTTCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
CACTTCTTGACT
Flanking Amino Acid:
VKDENDFMIQCEECLCWQHG
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.1
40.7
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
63.9
0.31
1
59.2
40.8
Minor 5ss
42
-0.9
3.1
56.4
48
Minor BPS
68.9
0.68
1.3
75.14
42

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025208
6608568 - 6666121
57554
ENSAPLT00000017982
6603669 - 6666121
62453
ENSAPLT00000003177
6599130 - 6666121
66992
ENSAPLT00000043814
6603669 - 6666121
62453
ENSAPLT00000027561
6599130 - 6666121
66992