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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_665524_665991_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
665524 - 665991
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
AATTAATTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCAATTAATT
Flanking Amino Acid:
GSSENEYIMKAIMRSFSLLQ
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.8
0.56
1
67.1
42.8
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
63.2
0.49
1.8
84.17
35.9

Associated Gene:

Gene:
CSE1L
Ensembl Gene ID:
ENSAPLG00000010368
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010876
659079 - 678463
19385