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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6655482_6658612_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6655482 - 6658612
Intron Length:
3131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGACA
5'SS Class:
major
3'SS Sequence:
ACTGTTGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAACA
Flanking Amino Acid:
YTCYICQDPPGQRSSLKYWY
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.8
39.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.6
0.44
0.9
66.4
40.1
Minor 5ss
30.8
-2.2
3.3
40.8
45.2
Minor BPS
79.4
0.92
1
82.25
33.1

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025208
6608568 - 6666121
57554
ENSAPLT00000017982
6603669 - 6666121
62453
ENSAPLT00000003177
6599130 - 6666121
66992
ENSAPLT00000043814
6603669 - 6666121
62453
ENSAPLT00000027561
6599130 - 6666121
66992