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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6660751_6662880_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6660751 - 6662880
Intron Length:
2130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
GTATTTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTCACTGTAATA
Flanking Amino Acid:
ENESKHNYSKVKDSVSKKVS
Intron Amino Acid Position:
891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
68.3
0.41
1
62.7
44
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
52.6
0.08
2
67.24
40.1

Associated Gene:

Gene:
PHF20
Ensembl Gene ID:
ENSAPLG00000003088
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025208
6608568 - 6666121
57554
ENSAPLT00000017982
6603669 - 6666121
62453
ENSAPLT00000003177
6599130 - 6666121
66992
ENSAPLT00000043814
6603669 - 6666121
62453
ENSAPLT00000027561
6599130 - 6666121
66992