About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6672816_6672950_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
6672816 - 6672950
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
GGCCCCTGCCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
ACTGCACTGATG
Flanking Amino Acid:
NLHDLVDHYTECGEGLCCAL
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
71.2
0.53
1
61
37.5
Major PPT
58.9
0.2
1
49.3
39.3
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
42.4
-0.7
2
46.3
40.7

Associated Gene:

Gene:
SLA2
Ensembl Gene ID:
ENSAPLG00000002986
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040103
6672453 - 6675174
2722
ENSAPLT00000003030
6672453 - 6675235
2783