About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6674787_6674908_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6674787 - 6674908
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
CCCTTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGACAT
U12 Branch Point Sequence:
AGCCGCAGGACA
Flanking Amino Acid:
RMGEQLNVLSEDGEWWLVAS
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
36.3
Major BPS
47.5
-0.1
1.3
52.5
43.3
Major PPT
79
0.65
0.7
72.8
25.4
Minor 5ss
42.7
-0.8
2.7
50.7
39.7
Minor BPS
38.7
-0.8
2
44.92
37

Associated Gene:

Gene:
SLA2
Ensembl Gene ID:
ENSAPLG00000002986
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043277
6672453 - 6675235
2783
ENSAPLT00000040103
6672453 - 6675174
2722
ENSAPLT00000003030
6672453 - 6675235
2783