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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6685572_6686975_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6685572 - 6686975
Intron Length:
1404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTATA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TACCTCTTACCT
Flanking Amino Acid:
GDNSPAVEAVVECNSRLDPT
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80
34.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.6
0.73
0.7
81.4
29
Minor 5ss
38.4
-1.3
3
47.8
43.1
Minor BPS
60
0.39
1.6
74.02
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002691
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033449
6683835 - 6711968
28134
ENSAPLT00000002741
6680858 - 6735163
54306
ENSAPLT00000044939
6682238 - 6735163
52926
ENSAPLT00000033463
6682238 - 6735163
52926