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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6687028_6688599_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6687028 - 6688599
Intron Length:
1572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAC
U12 Branch Point Sequence:
TTTTTTTTACCA
Flanking Amino Acid:
GINENTAKTLKCPALLVVGD
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
57.9
0.2
1.1
59.4
34.8
Major PPT
90.1
0.9
0.8
85.7
33.5
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
71.5
0.67
1.5
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002691
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002741
6680858 - 6735163
54306
ENSAPLT00000044939
6682238 - 6735163
52926
ENSAPLT00000033463
6682238 - 6735163
52926
ENSAPLT00000033449
6683835 - 6711968
28134