About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_6688666_6688950_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6688666 - 6688950
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGGAT
5'SS Class:
major
3'SS Sequence:
CTTTGTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGATGGAGAATT
Flanking Amino Acid:
NLQLFLTSYNSRRDLEIERP
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.5
39
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
85.5
0.8
0.8
76.9
37.3
Minor 5ss
29.2
-2.4
3.8
46
49.3
Minor BPS
38.7
-0.7
2.5
59.51
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002691
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044939
6682238 - 6735163
52926
ENSAPLT00000033463
6682238 - 6735163
52926
ENSAPLT00000033449
6683835 - 6711968
28134
ENSAPLT00000002741
6680858 - 6735163
54306